Job ID :   2019110514508792A8qYbCw

Create time :   2019-11-05 14:58:38

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Summary

Input file	Locus_name	Sign	Coverage(%)	Identity(%)	Match Gene	Min Gene Cov(%)	Min Gene Identity(%)	type	result
071.fasta	OCL1	perfect	100.0	100.0	11/11,100.0%	100.0	99.61	K locus	download
071.fasta	KL4*	High	100.0	98.53	21/27,77.8%	99.65	99.29	O locus	download

K locus Result

Download Locus Match:

Input file	Locus_name	Sign	Coverage(%)	Identity(%)	Match Gene	Min Gene Cov(%)	Min Gene Identity(%)
071.fasta	KL4*	High	100.0	98.53	21/27,77.8%	99.65	99.29

Sign
• Perfect: Locus sequence coverage == 100 and Locus sequence Identity==100
• High: Locus sequence coverage >=99 and Locus sequence Identity >=95
• LOW: Locus sequence coverage < 99 or Locus sequence Identity <95

Best locus Gene Coverage:

Download gene coverage picture:   Download gene Match:

Gene Name	Locus	Identity(%)	Match seq in Gene	Gene Length(bp)	Genome ID	Position in Genome	Export Gene Fasta
KL4_1_mviN	KL4	100.00	1..513	513	MEDG01000053.1	29386..30924	export fasta
KL4_2_fklB	KL4	99.57	1..235	235	MEDG01000053.1	30976..31680	export fasta
KL4_5_wzb	KL4	100.00	1..142	142	MEDG01000053.1	34843..35268	export fasta
KL4_6_wza	KL4	99.73	1..368	368	MEDG01000053.1	35276..36379	export fasta
KL4_7_gna	KL4	100.00	1..424	424	MEDG01000053.1	36749..38020	export fasta
KL4_8_gne2	KL4	100.00	1..340	340	MEDG01000053.1	38042..39061	export fasta
KL4_9_wzx	KL4	100.00	1..501	501	MEDG01000053.1	39079..40581	export fasta
KL4_10_ptr1	KL4	100.00	1..325	325	MEDG01000053.1	40604..41578	export fasta
KL4_11_gtr10	KL4	99.72	1..358	358	MEDG01000053.1	41591..42664	export fasta
KL4_12_wzy	KL4	100.00	1..450	450	MEDG01000053.1	42664..44013	export fasta
KL4_13_gtr11	KL4	100.00	1..370	370	MEDG01000053.1	44030..45139	export fasta
KL4_14_gtr12	KL4	99.75	1..392	392	MEDG01000053.1	45099..46274	export fasta
KL4_15_qnr	KL4	100.00	1..312	312	MEDG01000053.1	46274..47209	export fasta
KL4_16_itrB1	KL4	100.00	1..335	335	MEDG01000053.1	47217..48221	export fasta
KL4_17_atr3	KL4	100.00	1..175	175	MEDG01000053.1	48214..48738	export fasta
KL4_18_gdr	KL4	99.83	1..605	605	MEDG01000053.1	49007..50821	export fasta
KL4_19_gne3	KL4	100.00	1..340	340	MEDG01000053.1	50867..51886	export fasta
KL4_20_atr4	KL4	99.80	1..489	489	MEDG01000053.1	51946..53412	export fasta
KL4_21_atr5	KL4	100.00	1..142	142	MEDG01000053.1	53458..53883	export fasta
KL4_23_ugd	KL4	99.29	1..420	420	MEDG01000053.1	55316..56575	export fasta
KL4_27_lldP	KL4	99.47	3..571	571	MEDG01000053.1	61001..62707	export fasta

Input sequence fragments which match best locus:

Download Fragments as fasta:

Sequence ID	Locus Name	Start	End	strand	Coverage(%)	Identity(%)
MEDG01000053.1	KL4	29386	62710	+	100.00	98.53

Match Genes found outside best locus: 23 Genes

Download file

Gene Name	Locus	Identity(%)	Match seq in Gene	Gene Length(bp)	Genome ID	Position in Genome	Export Gene Fasta
KL9_26_lldR	KL9	100.00	1..250	250	MEDG01000053.1	62730..63479	export fasta
KL9_27_lldD	KL9	99.74	1..383	383	MEDG01000053.1	63479..64627	export fasta
KL9_28_ldhD	KL9	99.31	1..576	576	MEDG01000053.1	64898..66625	export fasta
KL19_22_lldR	KL19	100.00	1..250	250	MEDG01000053.1	62730..63479	export fasta
KL19_23_lldD	KL19	99.22	1..383	383	MEDG01000053.1	63479..64627	export fasta
KL19_24_dld	KL19	99.31	1..576	576	MEDG01000053.1	64898..66625	export fasta
KL19_26_dgkA	KL19	100.00	1..124	124	MEDG01000017.1	37826..38197	export fasta
KL19_31_GroL	KL19	100.00	1..544	544	MEDG01000017.1	36013..37644	export fasta
KL19_32_GroS	KL19	100.00	1..100	100	MEDG01000017.1	35652..35951	export fasta
KL116_21_QBM04676.1	KL116	99.46	1..553	553	MEDG01000053.1	61049..62707	export fasta
KL116_22_lldD	KL116	99.60	1..250	250	MEDG01000053.1	62730..63479	export fasta
KL116_24_ldhD	KL116	99.31	1..576	576	MEDG01000053.1	64898..66625	export fasta
KL120_1_APB98_RS17325	KL120	99.28	1..553	553	MEDG01000053.1	61049..62707	export fasta
KL128_22_lldD	KL128	100.00	1..250	250	MEDG01000053.1	62730..63479	export fasta
KL128_24_ldhD	KL128	99.31	1..576	576	MEDG01000053.1	64898..66625	export fasta
KL30_1_F962_03597	KL30	99.46	1..553	553	MEDG01000053.1	61049..62707	export fasta
KL30_19_F962_03615	KL30	99.17	1..240	240	MEDG01000053.1	31723..32442	export fasta
KL39_1_B756_RS0104295	KL39	99.64	1..553	553	MEDG01000053.1	61049..62707	export fasta
KL39_5_B756_RS0104315	KL39	99.52	1..420	420	MEDG01000053.1	55316..56575	export fasta
KL44_1_F915_03460	KL44	99.46	1..553	553	MEDG01000053.1	61049..62707	export fasta
KL44_29_F915_03488	KL44	99.81	1..513	513	MEDG01000053.1	29386..30924	export fasta
KL45_1_F922_03694	KL45	99.64	1..553	553	MEDG01000053.1	61049..62707	export fasta
KL48_1_F978_00139	KL48	99.46	1..553	553	MEDG01000053.1	61049..62707	export fasta

O locus Result

Download Locus Match:

Input file	Locus_name	Sign	Coverage(%)	Identity(%)	Match Gene	Min Gene Cov(%)	Min Gene Identity(%)
071.fasta	OCL1	perfect	100.0	100.0	11/11,100.0%	100.0	99.61

Sign
• Perfect: Locus sequence coverage == 100 and Locus sequence Identity==100
• High: Locus sequence coverage >=99 and Locus sequence Identity >=95
• LOW: Locus sequence coverage < 99 or Locus sequence Identity <95

Best locus Gene Coverage:

Download gene coverage picture:   Download gene Match:

Match Collinear picture:

Download Collinear picture:

Gene Name	Locus	Identity(%)	Match seq in Gene	Gene Length(bp)	Genome ID	Position in Genome	Export Gene Fasta
OCL1_1_ilvE	OCL1	100.00	1..308	308	MEDG01000033.1	59233..60156	export fasta
OCL1_2_gtrOC1	OCL1	100.00	1..296	296	MEDG01000033.1	60227..61114	export fasta
OCL1_3_gtrOC2	OCL1	100.00	1..342	342	MEDG01000033.1	61140..62165	export fasta
OCL1_4_pda1	OCL1	100.00	1..251	251	MEDG01000033.1	62165..62917	export fasta
OCL1_5_gtrOC3	OCL1	100.00	1..254	254	MEDG01000033.1	62917..63678	export fasta
OCL1_6_gtrOC4	OCL1	99.71	1..349	349	MEDG01000033.1	63678..64724	export fasta
OCL1_7_ghy	OCL1	100.00	1..296	296	MEDG01000033.1	64727..65614	export fasta
OCL1_8_gtrOC5	OCL1	99.61	1..254	254	MEDG01000033.1	65674..66435	export fasta
OCL1_9_gtrOC6	OCL1	100.00	1..309	309	MEDG01000033.1	66468..67394	export fasta
OCL1_10_gtrOC7	OCL1	100.00	1..363	363	MEDG01000033.1	67793..68881	export fasta
OCL1_11_aspS	OCL1	100.00	1..592	592	MEDG01000033.1	68940..70715	export fasta

Input sequence fragments which match best locus:

Download Fragments as fasta:

Sequence ID	Locus Name	Start	End	strand	Coverage(%)	Identity(%)
MEDG01000033.1	OCL1	59233	70715	+	100.00	100.00

Match Genes found outside best locus: 17 Genes

Download file

Gene Name	Locus	Identity(%)	Match seq in Gene	Gene Length(bp)	Genome ID	Position in Genome	Export Gene Fasta
OCL1c_9_AHZ89396.1	OCL1c	100.00	1..189	189	MEDG01000012.1	37316..37882	export fasta
OCL1c_9_AHZ89396.1	OCL1c	100.00	1..189	189	MEDG01000003.1	111005..111571	export fasta
OCL1c_10_AHZ89397.1	OCL1c	99.32	1..148	148	MEDG01000012.1	36795..37238	export fasta
OCL1c_10_AHZ89397.1	OCL1c	99.32	1..148	148	MEDG01000003.1	111649..112092	export fasta
OCL1d_7_AHZ89393.1	OCL1d	100.00	1..189	189	MEDG01000012.1	37316..37882	export fasta
OCL1d_7_AHZ89393.1	OCL1d	100.00	1..189	189	MEDG01000003.1	111005..111571	export fasta
OCL1d_8_AHZ89392.1	OCL1d	99.32	1..148	148	MEDG01000012.1	36795..37238	export fasta
OCL1d_8_AHZ89392.1	OCL1d	99.32	1..148	148	MEDG01000003.1	111649..112092	export fasta
OCL9_9_AspS	OCL9	99.84	1..612	612	MEDG01000033.1	68937..70772	export fasta
OCL11_2_K625_RS0102970	OCL11	99.32	1..296	296	MEDG01000033.1	60227..61114	export fasta
OCL11_3_K625_RS0102975	OCL11	99.42	1..342	342	MEDG01000033.1	61140..62165	export fasta
OCL11_4_K625_RS0102980	OCL11	100.00	1..251	251	MEDG01000033.1	62165..62917	export fasta
OCL11_10_K625_RS0103010	OCL11	100.00	1..71	71	MEDG01000033.1	67441..67653	export fasta
OCL11_11_K625_RS0103015	OCL11	100.00	1..592	592	MEDG01000033.1	68940..70715	export fasta
OCL12_1_F910_00577	OCL12	100.00	1..308	308	MEDG01000033.1	59233..60156	export fasta
OCL12_2_F910_00578	OCL12	99.32	1..296	296	MEDG01000033.1	60227..61114	export fasta
OCL12_3_F910_00579	OCL12	99.42	1..342	342	MEDG01000033.1	61140..62165	export fasta
OCL12_4_F910_00580	OCL12	100.00	1..251	251	MEDG01000033.1	62165..62917	export fasta
OCL12_5_F910_00581	OCL12	99.21	1..253	255	MEDG01000033.1	62917..63675	export fasta
OCL12_13_F910_00589	OCL12	99.42	1..342	342	MEDG01000033.1	67856..68881	export fasta
OCL12_14_F910_00590	OCL12	99.83	1..592	592	MEDG01000033.1	68940..70715	export fasta